PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG468000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 356aa    MW: 38538.4 Da    PI: 8.8718
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG468000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.67.9e-17108157255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r +h++ E+rRR +iN+++e LrellP+     ++K +Ka+ L +++eYI+ Lq
  Pavir.1NG468000.1.p 108 RSKHSATEQRRRTKINDRLEILRELLPHG----DQKRDKASFLLEVIEYIRFLQ 157
                          889*************************7....7*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-18104168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-22105172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.66106156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.19E-16108161No hitNo description
PfamPF000102.7E-14108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-12112162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MAPSGLEADS AEHLLPGGVG TFSIRQAPST AQPRGQPAGH GVVATGAFAP VLHGSRTEAT  60
HGAESGARAH SGPASMWQDS GADQRSRATR GEGRSSGSSG DQGPSTPRSK HSATEQRRRT  120
KINDRLEILR ELLPHGDQKR DKASFLLEVI EYIRFLQEKV QKYESAHPQK NHEDSSMPWA  180
KLYYRSCWKN TGNITQVQGG SSAPTQAMNK EQYCSTKTTV APTLFSTHSA GETSIDEISS  240
QKATSTPQNW ADDSTPSKQP PWLSMSTSDS GNKTLSKKEK QTLHEDTRSL SNAYSQGLLN  300
RLTQALKSSG VDPSQASISV EINMDKRATE PSNTHGNLKD NECEETIHVT KKLRC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.325560.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953770.10.0PREDICTED: transcription factor BIM2-like isoform X2
TrEMBLK3YQG20.0K3YQG2_SETIT; Uncharacterized protein
STRINGSi016505m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.11e-39BES1-interacting Myc-like protein 2